Software

BRAINscape: An R package to visualize eQTL and DESeq2 analysis results through an interactive Shiny app for Hispanics and Non-Hispanics White (NHW) in MU-BRAINS.

less than 1 minute read

Published: February 11, 2025

BRAINscape is an interactive Shiny-based platform for exploring, visualizing, and comparing multi-ethnic brain eQTL and GWAS signals in Alzheimer’s disease..GitHub Paper

miRPipe: Seed-based Synthetic Small Non-coding RNA Sequence Simulator

less than 1 minute read

Published: July 14, 2022

miRPipe — a powerful end-to-end software for accurate detection, annotation, and quantification of known and novel small RNAs from sequencing data.GitHub Paper

miRSim: Seed-based Synthetic Small Non-coding RNA Sequence Simulator

less than 1 minute read

Published: June 14, 2021

Synthetic small RNA simulator for benchmarking miRNA and piRNA RNA-seq pipelines with known ground truth. GitHub PDF

Vivek Ruhela

Software

BRAINscape: An R package to visualize eQTL and DESeq2 analysis results through an interactive Shiny app for Hispanics and Non-Hispanics White (NHW) in MU-BRAINS.

miRPipe: Seed-based Synthetic Small Non-coding RNA Sequence Simulator

miRSim: Seed-based Synthetic Small Non-coding RNA Sequence Simulator