Notebook
Papers explained, methods, and new ideas.
Longer notes on my research, written for people outside my subfield.
Paper explained
August 19, 2026
August 19, 2026
October 28, 2025
August 19, 2026
BDL-SP: Using Bio-Inspired Deep Learning to Identify Altered Signaling Pathways in Multiple MyelomaA beginner-friendly and technical guide to BDL-SP, a graph-based explainable deep-learning framework for distinguishing MGUS from multiple myeloma and identifying altered genes and pathways from whole-exome sequencing data.
Paper explainedmultiple myelomaMGUSwhole-exome sequencinggraph convolutional networkexplainable AIsignaling pathways
August 19, 2026
From Genomic Complexity to a 295-Gene Panel: How BIO-DGI Studies Multiple Myeloma ProgressionA beginner-friendly and technical guide to BIO-DGI, an explainable graph-learning framework used to derive a 295-gene research panel for studying the transition from MGUS to multiple myeloma.
Methodmultiple myelomaMGUScancer genomicsgraph neural networksexplainable AItargeted sequencing
October 28, 2025
miRPipe: Beginner and Advanced User GuideAn illustrated guide to the purpose, workflow, use, interpretation, applications, benchmarking, and limitations of miRPipe.
small RNAmiRNARNA-seqpipeline